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Omics & Imaging Platform at IMB

Molecular Biology

  • Facilities for all standard molecular biology methods including DNA & RNA extraction and quantitation, PCR, gel electrophoresis, cloning, etc.

  • Specialized electrophoresis equipment (Agilent Bioanalyzer, Pharmacia Phastsystem, Bio-Rad CHEF Mapper) for rapid analysis of proteins and nucleic acids or separation of large DNA molecules.

  • QPIX colony picker for picking and arraying bacterial colonies.

  • Small scale genotyping.

  • Quantitative PCR (Roche Lightcycler) for gene expression analysis

  • Experienced, talented and dedicated technical support staff.

 

We offer:

  • Library (cDNA or genomic) construction and screening.

  • Gene isolation and cloning.

  • Gene expression analysis by qPCR.

  • Integration with microarray, microscopy and Research Informatics platforms.

 

Research Informatics

  • High-speed server with 72 Gb available memory

  • Large capacity Sun Enterprise 20000

  • 18 node cluster used primarily for BLAST searches

 

We offer:

  • A wide variety of informatics software for biology and chemistry.

  • Custom scripts to build software pipelines.

  • Integrated database and website construction.

  • Experience in genomic sequence assembly and analysis.

 

Microarray

  • Axon Genepix 4200A Non-confocal scanner equipped with 4 internal lasers (488, 532, 594, 635nm wavelength) for greater functionality, 5 – 100 micron resolution.

  • Industry-leading low-noise digitization technology with 16 bit digital resolution.

  • Genepix Pro Software integrates seamlessly with scanner and downstream software.

  • Acuity SQL database analysis software offering statistical, normalization, clustering and visualization capabilities.

  • Dedicated technical support

 

We offer:

  • Gene Expression Analysis (Hybridization through to scanning)

  • Scanned image analysis (Post processing analysis)

  • Comparative Genetic Hybridizations (CGH) and miRNA Hybridizations

 

Imaging

  • Scanning Electron Microscope (SEM) equipped with variable-pressure chamber providing high image quality at low voltages (resolution 2560 x 1920 pixels)

  • Transmission Electron Microscopy (TEM) equipped with cryostage providing high-contrast imaging (resolution under 0.4nm) on unstained and freeze-fixed materials

  • Light and Fluorescence microscopes equipped with differential interference contrast, epi-fluorescence and a high-resolution camera (image outputs 1280 x 1024 pixels) capable of capturing fleeting and low intensity images

  • Experienced, dedicated technical support staff

 

We offer:

  • Scanning imaging of firm and soft substances

  • Enhanced elemental X-ray microanalysis

  • In-situ hybridization to detect gene activity at subcellular levels

  • Sophisticated image analysis, including stereology, for improved determination and interpretation of biological processes within cells and tissues

 

Related Information

Institutes: